Document Type : Review Article

Authors

1 Nanobiotechnology Department, Faculty of Innovative Science and Technology, Razi University, Kermanshah, Iran

2 Nanobiotechnology Laboratory, Department of Biotechnology, SGB Amravati University, Amravati-444 602, Maharashtra, India

3 Department of Microbiology, Nicolaus Copernicus University, 87-100 Toruń, Poland

Abstract

Finding efficient therapeutic strategies to fight antibiotic-resistant bacteria is a complicated affair specifically in the therapy of chronic bacterial infections related to hospital-acquired infections. Recently, three major antibacterial systems based on antisense RNA, CRISPR-Cas9, and metal/metal oxide nanoparticles particularly silver (Ag) nanoparticles have shown more effective antibacterial activity compared to conventional antibiotics. ROS generation, attachment to the cell membrane, disruption of bacterial envelop, inactivation of electron transport chain, decreasing the local pH, modulation of cell signaling, and denaturation of biological macromolecules such as proteins and nucleic acids have been found as the main antibacterial functions of Ag nanoparticles.  Antisense RNA, a single-stranded RNA, can hybridize with complementary genes in messenger RNA (mRNA) followed by blockage translation of these genes into proteins. Moreover, CRISPR (clustered regularly interspaced short palindromic repeats) is a family of viral DNA sequences derived from bacteriophages, which can target and destroy foreign DNA by nuclease activity. There are 2 classes and 6 subtypes (I-VI) of CRISPR-Cas systems, which may be engineered as potential antibacterial agents to target specific sequences. Therefore, here, recent advances and challenges for the antibacterial application of these three therapeutic agents are presented.   

Graphical Abstract

Antisense RNA, the modified CRISPR-Cas9, and metal/metal oxide nanoparticles to inactivate pathogenic bacteria

Keywords

Main Subjects

Selected author of this article by journal

ِDr. Mahendra Rai
SGB Amravati University

Google Scholar(H Index=69); Publons(H Index=48)

Open Access

This article is licensed under a CC BY License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit: http://creativecommons.org/licenses/by/4.0/

 

Publisher’s Note

CMBR journal remains neutral with regard to jurisdictional claims in published maps and institutional afflictions.

 

Letters to Editor

Given that CMBR Journal's policy in accepting articles will be strict and will do its best to ensure that in addition to having the highest quality published articles, the published articles should have the least similarity (maximum 15%). Also, all the figures and tables in the article must be original and the copyright permission of images must be prepared by authors. However, some articles may have flaws and have passed the journal filter, which dear authors may find fault with. Therefore, the editor of the journal asks the authors, if they see an error in the published articles of the journal, to email the article information along with the documents to the journal office.

CMBR Journal welcomes letters to the editor ([email protected], [email protected]) for the post-publication discussions and corrections which allows debate post publication on its site, through the Letters to Editor. Critical letters can be sent to the journal editor as soon as the article is online. Following points are to be considering before sending the letters (comments) to the editor.

[1] Letters that include statements of statistics, facts, research, or theories should include appropriate references, although more than three are discouraged.

[2] Letters that are personal attacks on an author rather than thoughtful criticism of the author’s ideas will not be considered for publication.

[3] There is no limit to the number of words in a letter.

[4] Letter writers should include a statement at the beginning of the letter stating that it is being submitted either for publication or not.

[5] Anonymous letters will not be considered.

[6] Letter writers must include Name, Email Address, Affiliation, mobile phone number, and Comments.

[7] Letters will be answered as soon as possible.

  1. World Health O (2018) Managing epidemics: key facts about major deadly diseases. World Health Organization, Geneva
  2. Monahan M, Jowett S, Pinkney T, Brocklehurst P, Morton DG, Abdali Z, Roberts TE (2020) Surgical site infection and costs in low- and middle-income countries: A systematic review of the economic burden. PLOS ONE 15(6):e0232960. doi:https://doi.org/10.1371/journal.pone.0232960
  3. Guo Y, Song G, Sun M, Wang J, Wang Y (2020) Prevalence and Therapies of Antibiotic-Resistance in Staphylococcus aureus. Frontiers in Cellular and Infection Microbiology 10(107). doi:https://doi.org/10.3389/fcimb.2020.00107
  4. Chen J, Sidibi AM, Shen X, Dao K, Maiga A, Xie Y, Hesketh T (2021) Lack of antibiotic knowledge and misuse of antibiotics by medical students in Mali: a cross-sectional study. Expert Review of Anti-infective Therapy 19(6):797-804. doi:https://doi.org/10.1080/14787210.2021.1857731
  5. Mallah N, Badro DA, Figueiras A, Takkouche B (2020) Association of knowledge and beliefs with the misuse of antibiotics in parents: A study in Beirut (Lebanon). PLOS ONE 15(7):e0232464. doi:https://doi.org/10.1371/journal.pone.0232464
  6. Van TTH, Yidana Z, Smooker PM, Coloe PJ (2020) Antibiotic use in food animals worldwide, with a focus on Africa: Pluses and minuses. Journal of Global Antimicrobial Resistance 20:170-177. doi:https://doi.org/10.1016/j.jgar.2019.07.031
  7. Tariq S, Wani S, Rasool W, Shafi K, Bhat MA, Prabhakar A, Shalla AH, Rather MA (2019) A comprehensive review of the antibacterial, antifungal and antiviral potential of essential oils and their chemical constituents against drug-resistant microbial pathogens. Microbial pathogenesis 134:103580. doi:https://doi.org/10.1016/j.micpath.2019.103580
  8. Azeez SH, Jafar SN, Aziziaram Z, Fang L, Mawlood AH, Ercisli MF (2021) Insulin-producing cells from bone marrow stem cells versus injectable insulin for the treatment of rats with type I diabetes. Cellular, Molecular and Biomedical Reports 1(1):42-51
  9. Baquero F, Martínez JL, Lanza VF, Rodríguez-Beltrán J, Galán JC, Millán AS, Cantón R, Coque TM Evolutionary Pathways and Trajectories in Antibiotic Resistance. Clinical Microbiology Reviews 0(0):e00050-00019. doi:https://doi.org/doi:10.1128/CMR.00050-19
  10. Xue K, MacLaren RE (2020) Antisense oligonucleotide therapeutics in clinical trials for the treatment of inherited retinal diseases. Expert Opinion on Investigational Drugs 29(10):1163-1170. doi:https://doi.org/10.1080/13543784.2020.1804853
  11. Patil SD, Sharma R, Srivastava S, Navani NK, Pathania R (2013) Downregulation of yidC in Escherichia coli by Antisense RNA Expression Results in Sensitization to Antibacterial Essential Oils Eugenol and Carvacrol. PLOS ONE 8(3):e57370. doi:https://doi.org/10.1371/journal.pone.0057370
  12. Palacios Araya D, Palmer KL, Duerkop BA (2021) CRISPR-based antimicrobials to obstruct antibiotic-resistant and pathogenic bacteria. PLOS Pathogens 17(7):e1009672. doi: https://doi.org/10.1371/journal.ppat.1009672
  13. Zheng Y, Han J, Wang B, Hu X, Li R, Shen W, Ma X, Ma L, Yi L, Yang S, Peng W (2019) Characterization and repurposing of the endogenous Type I-F CRISPR–Cas system of Zymomonas mobilis for genome engineering. Nucleic Acids Research 47(21):11461-11475. doi:https://doi.org/10.1093/nar/gkz940
  14. Zohra T, Numan M, Ikram A, Salman M, Khan T, Din M, Salman M, Farooq A, Amir A, Ali M (2021) Cracking the Challenge of Antimicrobial Drug Resistance with CRISPR/Cas9, Nanotechnology and Other Strategies in ESKAPE Pathogens. Microorganisms 9(5):954. doi:https://doi.org/doi:10.3390/microorganisms9050954
  15. Bikard D, Euler CW, Jiang W, Nussenzweig PM, Goldberg GW, Duportet X, Fischetti VA, Marraffini LA (2014) Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials. Nature Biotechnology 32(11):1146-1150. doi:https://doi.org/10.1038/nbt.3043
  16. Citorik RJ, Mimee M, Lu TK (2014) Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases. Nature Biotechnology 32(11):1141-1145. doi:https://doi.org/10.1038/nbt.3011
  17. Alavi M, Nokhodchi A (2021) Micro- and nanoformulations of paclitaxel based on micelles, liposomes, cubosomes, and lipid nanoparticles: Recent advances and challenges. Drug Discovery Today). doi:https://doi.org/10.1016/j.drudis.2021.10.007
  18. Alavi M, Webster TJ (2021) Recent progress and challenges for polymeric microsphere compared to nanosphere drug release systems: Is there a real difference? Bioorganic & Medicinal Chemistry 33:116028. doi:https://doi.org/10.1016/j.bmc.2021.116028
  19. Hu R, Liao G, Huang Z, Qiao H, Liu H, Shu Y, Wang B, Qi X (2021) Recent advances of monoelemental 2D materials for photocatalytic applications. Journal of Hazardous Materials 405:124179. doi:https://doi.org/10.1016/j.jhazmat.2020.124179
  20. Alavi M, Rai M (2021) Chapter 11 - Antibacterial and wound healing activities of micro/nanocarriers based on carboxymethyl and quaternized chitosan derivatives. In: Rai M, dos Santos CA (eds) Biopolymer-Based Nano Films. Elsevier, pp 191-201. doi:https://doi.org/10.1016/B978-0-12-823381-8.00009-0
  21. Alavi M, Jabari E, Jabbari E (2021) Functionalized carbon-based nanomaterials and quantum dots with antibacterial activity: a review. Expert Review of Anti-infective Therapy 19(1):35-44. doi:https://doi.org/10.1080/14787210.2020.1810569
  22. Hamdan N, Yamin A, Hamid SA, Khodir WKWA, Guarino V (2021) Functionalized Antimicrobial Nanofibers: Design Criteria and Recent Advances. Journal of Functional Biomaterials 12(4):59. doi:https://doi.org/doi:10.3390/jfb12040059
  23. Alavi M, Kennedy JF (2021) Recent advances of fabricated and modified Ag, Cu, CuO and ZnO nanoparticles by herbal secondary metabolites, cellulose and pectin polymers for antimicrobial applications. Cellulose 28(6):3297-3310. doi:https://doi.org/10.1007/s10570-021-03746-5
  24. Choi Y, Lee SY (2020) Biosynthesis of inorganic nanomaterials using microbial cells and bacteriophages. Nature Reviews Chemistry 4(12):638-656. doi:https://doi.org/10.1038/s41570-020-00221-w
  25. Alavi M, Nokhodchi A (2021) Synthesis and modification of bio-derived antibacterial Ag and ZnO nanoparticles by plants, fungi, and bacteria. Drug Discovery Today 26(8):1953-1962. doi:https://doi.org/10.1016/j.drudis.2021.03.030
  26. Kumar JA, Krithiga T, Manigandan S, Sathish S, Renita AA, Prakash P, Prasad BSN, Kumar TRP, Rajasimman M, Hosseini-Bandegharaei A, Prabu D, Crispin S (2021) A focus to green synthesis of metal/metal based oxide nanoparticles: Various mechanisms and applications towards ecological approach. Journal of Cleaner Production 324:129198. doi:https://doi.org/10.1016/j.jclepro.2021.129198
  27. Alavi M, Varma RS (2021) Antibacterial and wound healing activities of silver nanoparticles embedded in cellulose compared to other polysaccharides and protein polymers. Cellulose 28(13):8295-8311. doi:https://doi.org/10.1007/s10570-021-04067-3
  28. Yougbaré S, Mutalik C, Okoro G, Lin IH, Krisnawati DI, Jazidie A, Nuh M, Chang C-C, Kuo T-R (2021) Emerging Trends in Nanomaterials for Antibacterial Applications. Int J Nanomedicine 16:5831-5867. doi:https://doi.org/10.2147/IJN.S328767
  29. Petriman N-A, Jauß B, Hufnagel A, Franz L, Sachelaru I, Drepper F, Warscheid B, Koch H-G (2018) The interaction network of the YidC insertase with the SecYEG translocon, SRP and the SRP receptor FtsY. Scientific Reports 8(1):578. doi:https://doi.org/10.1038/s41598-017-19019-w
  30. Kedar GC, Brown-Driver V, Reyes DR, Hilgers MT, Stidham MA, Shaw KJ, Finn J, Haselbeck RJ (2007) Evaluation of the metS and murB Loci for Antibiotic Discovery Using Targeted Antisense RNA Expression Analysis in Bacillus anthracis. Antimicrobial Agents and Chemotherapy 51(5):1708-1718. doi:https://doi.org/doi:10.1128/AAC.01180-06
  31. Park JY, Moon BY, Park JW, Thornton JA, Park YH, Seo KS (2017) Genetic engineering of a temperate phage-based delivery system for CRISPR/Cas9 antimicrobials against Staphylococcus aureus. Scientific Reports 7(1):44929. doi:https://doi.org/10.1038/srep44929
  32. Cobb LH, Park J, Swanson EA, Beard MC, McCabe EM, Rourke AS, Seo KS, Olivier AK, Priddy LB (2019) CRISPR-Cas9 modified bacteriophage for treatment of Staphylococcus aureus induced osteomyelitis and soft tissue infection. PLOS ONE 14(11):e0220421. doi:https://doi.org/10.1371/journal.pone.0220421
  33. Rodrigues M, McBride SW, Hullahalli K, Palmer KL, Duerkop BA (2019) Conjugative Delivery of CRISPR-Cas9 for the Selective Depletion of Antibiotic-Resistant Enterococci. Antimicrobial Agents and Chemotherapy 63(11):e01454-01419. doi:https://doi.org/doi:10.1128/AAC.01454-19
  34. Reuter A, Hilpert C, Dedieu-Berne A, Lematre S, Gueguen E, Launay G, Bigot S, Lesterlin C (2021) Targeted-antibacterial-plasmids (TAPs) combining conjugation and CRISPR/Cas systems achieve strain-specific antibacterial activity. Nucleic Acids Research 49(6):3584-3598. doi: https://doi.org/10.1093/nar/gkab126
  35. Dakal TC, Kumar A, Majumdar RS, Yadav V (2016) Mechanistic Basis of Antimicrobial Actions of Silver Nanoparticles. Frontiers in Microbiology 7(1831). doi:https://doi.org/10.3389/fmicb.2016.01831
  36. Bilal I, Xie S, Elburki MS, Aziziaram Z, Ahmed SM, Jalal Balaky ST (2021) Cytotoxic effect of diferuloylmethane, a derivative of turmeric on different human glioblastoma cell lines. Cellular, Molecular and Biomedical Reports 1(1):14-22
  37. Aziziaram Z, Bilal I, Zhong Y, Mahmod AK, Roshandel MR (2021) Protective effects of curcumin against naproxen-induced mitochondrial dysfunction in rat kidney tissue. Cellular, Molecular and Biomedical Reports 1(1):23-32
  38. Ayaz M, Ullah F, Sadiq A, Ullah F, Ovais M, Ahmed J, Devkota HP (2019) Synergistic interactions of phytochemicals with antimicrobial agents: Potential strategy to counteract drug resistance. Chemico-Biological Interactions 308:294-303. doi:https://doi.org/10.1016/j.cbi.2019.05.050
  39. Ghasemi M, Khorsandi K, Kianmehr Z (2021) Photodynamic inactivation with curcumin and silver nanoparticles hinders Pseudomonas aeruginosa planktonic and biofilm formation: evaluation of glutathione peroxidase activity and ROS production. World Journal of Microbiology and Biotechnology 37(9):149. doi:https://doi.org/10.1007/s11274-021-03104-4
  40. Roy A, Bulut O, Some S, Mandal AK, Yilmaz MD (2019) Green synthesis of silver nanoparticles: biomolecule-nanoparticle organizations targeting antimicrobial activity. RSC Advances 9(5):2673-2702. doi:https://doi.org/10.1039/C8RA08982E